Microscopic animals are animals that are too small to be seen by the naked eye. Microorganisms such as bacteria are almost all too small to be seen with the naked eye, though these are not qualified as animals. Eukaryotic (complex-celled) unicellular organisms with animal-like characteristics are called protists, but these too are not considered part of Kingdom Animalia (also known as metazoa). True animals are multicellular and have differentiated tissues.

Microscopic animals are the most numerous of all animals. If aliens were instructed to take a random animal from Earth, they'd probably grab some type of microscopic animal. Common microscopic animals include planarians (flatworms), numerous mites, including dust mites and spider mites, and aquatic crustaceans such as copepods and cladocerans (water fleas). The most numerous microscopic animals are nematodes (roundworms), rotifers (aquatic filter-feeders), and tardigrades (water bears). Nematodes, in particular, are probably the most numerous animal on Earth, representing at least 90% of all life on the sea floor, and ubiquitous in all habitable environments on land and sea.

Microscopic animals are part of a size continuum that stretches all the way from viruses to the largest living organisms. They were first discovered by the Dutch scientist Antonie van Leeuwenhoek, the Father of Microbiology, in 1675, using microscopes of his own design, some of which could magnify up to 500 times. The smallest object that can be seen with the unaided human eye ranges from about 1/40 to 1 mm, but "microscopic" often refers to any animal smaller than 1 mm in width, especially smaller than 1/10 mm in width.

Microscopic animals are extremely important to the global ecosystem, making up a significant portion of biomass and representing the base of some food webs. The smallest microscopic animals, like rotifers, mostly live on bacteria, while larger specimens consume smaller animals or suck fluids from trees. Mites are especially adapted to the latter, and are found on large numbers under the leaves of many plants. Dust mites, the most common cause of allergies, are found in nearly every human home on the planet, where they survive on dead skin cells that drop from human inhabitants. A common strategy for killing these tiny beasts is to reduce ambient moisture.

Because microscopic animals are so numerous and distributed, only a portion of them have been described by science. Others will surely be discovered in the future, adding to our knowledge of the planet's biodiversity.